PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G086300.3
Common NameB456_013G086300, LOC105782272
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 282aa    MW: 30852.9 Da    PI: 6.6187
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G086300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like331.3e-101233355
             G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                        +++m+++gLtl+h+kSHLQkYRl
  Gorai.013G086300.3  1 MRVMGIPGLTLYHLKSHLQKYRL 23
                        789*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-9123IPR009057Homeodomain-like
PfamPF143791.6E-2160106IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRVMGIPGLT LYHLKSHLQK YRLGKSLGDN TDYKEMQSSN GNFIRDTSDG IHGHMNESLQ  60
IPQALQMQME VQQKLNEQIE VQRHLQLRIE AQGKYLQTVL KKAQETLAGY SSSSAGAELA  120
RAELSQLVSM VNTGCTSSSF SELTEVGGSS IIERKPMRGT ICSMGSSLTS SESSGRNDKA  180
PLENGNICTQ NVEFSLMDIH PEKKPLISCA SNQANGKKRS VSKVSDGVCV EQPLAKRLEL  240
PEEETGGCLR KSGFLELFDL NSQCHNDIES GPKAIDLNCR E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5789868e-99JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462358.10.0PREDICTED: uncharacterized protein LOC105782272 isoform X1
TrEMBLA0A0D2VB370.0A0A0D2VB37_G
TrEMBLA0A0D2VCG30.0A0A0D2VCG3_G
STRINGVIT_01s0026g02550.t011e-106(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.19e-63G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]